Examples

A list of Checkatlas results on different atlases configuration

Example 1 - Evaluate and compare heterogenous scanpy atlases

Evaluate and compare different atlases: Example 1

This example has been generated with 1-Atlas_comparison.ipynb which you can download and run in checkatlas/examples/jupyter/ folder.

Example 2 - Evaluate different version of the same atlas

Evaluate different version of your atlas: Example 2

This example has been generated with 2-Version_comparison.ipynb which you can download and run in checkatlas/examples/jupyter/ folder.

Example 3 - Evaluate Scanpy, Seurat and CellRanger atlases

Evaluate Scanpy, Seurat and CellRanger objects in your folder: Example 3

This example has been generated with 3-AtlasType_comparison.ipynb which you can download and run in checkatlas/examples/jupyter/ folder.

Example 4 - Evaluate post-process and raw atlases

Evaluate an integrated Scanpy atlas with the corresponding raw CellRanger atlases: Example 3

This example has been generated with 4-AtlasRawvsFinal_comparison.ipynb which you can download and run in checkatlas/examples/jupyter/ folder.

Example 5 - Avaluate different cellranger version atlases

Evaluate different Cellranger atlases with multiple chemistry version and cellranger version: Example 3

This example has been generated with 5-CellRanger_comparison.ipynb which you can download and run in checkatlas/examples/jupyter/ folder.